BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002B03SP1|AL424904
(813 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1295 1461 0.0
>3x_Contig1295
Length = 7117
Score = 1461 bits (718), Expect = 0.0
Identities = 774/813 (95%)
Strand = Plus / Plus
Query: 1 tgtytccttcattaccttcacgactaacgacagatacaatcaacacattcgcaaattact 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3248 tgtctccttcattaccttcacgactaacgacagatacaatcaacacattcgcaaattact 3307
Query: 61 tcactttgcatgcatcttttaacaatcccatabbtttcgcatcataccttaagatacaag 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3308 tcactttgcatgcatcttttaacaatcccataactttcgcatcataccttaagatacaag 3367
Query: 121 gtacactcatcagtwacactgcgcgcgagtwtatatwtgtttatdadacatagaatatta 180
|||||||||||||| ||||||||||||||| ||||| ||||||| | |||||||||||||
Sbjct: 3368 gtacactcatcagtaacactgcgcgcgagtatatatatgtttataaaacatagaatatta 3427
Query: 181 tgtgggntatagcacccatctgcgggctcactccgactcawtatcagggattctcccttg 240
||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 3428 tgtggaatatagcacccatctgcggactcactccgactcaatatcagggattctcccttg 3487
Query: 241 twcatctacgctgactctgtwcatccagcgtttcatgcagawacattatatcacatctca 300
| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct: 3488 tacatctacgctgactctgtacatccagcgtttcatgcagaaacattatatcacatcaca 3547
Query: 301 cgaattatcatgcctgacgaaaccacgcagcttttcctgawatttttyacctttccacga 360
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 3548 cgaattatcatgcctgacgaaaccacgcagcttttcctgaaatttttcacctttccacga 3607
Query: 361 tgagatgtgaaatatcawtwwwwcttacwggagttaccatttwacatttcgataggdaaa 420
||||||||||||||||| | ||||| ||||| ||||||| ||||||||||||| |||
Sbjct: 3608 tgagatgtgaaatatcaataaaacttacaggagtaaccatttaacatttcgataggaaaa 3667
Query: 421 gtatttgttttacacatgatggcatttgttcaatttgwwgcttcttttatgatatattct 480
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 3668 gtatttgttttacacatgatggcatttgttcaatttgaagcttcttttatgaaatattct 3727
Query: 481 tattacttatdtsgttttattatttrgtttctcttattttcaaaggaccawagakatagt 540
|||||||||| | |||||||||||| |||||||||||||||||||||||| ||| |||||
Sbjct: 3728 tattacttatatcgttttattatttagtttctcttattttcaaaggaccaaagaaatagt 3787
Query: 541 ctgcttcattacgtgcttaatctgattatstctacacttgcsagaaccaggaaattttac 600
||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 3788 ctgcttcattacgagcttaatctgattatctctacacttgccagaaccaggaaattttac 3847
Query: 601 attagaaatgtctgttgaaactgctttgtcttacgctgctttgatcttggctgatgctga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3848 attagaaatgtctgttgaaactgctttgtcttacgctgctttgatcttggctgatgctga 3907
Query: 661 tatcgaagtctcttctgaaaagttgttggctttgactgaagctgccaacgtcccagttga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3908 tatcgaagtctcttctgaaaagttgttggctttgactgaagctgccaacgtcccagttga 3967
Query: 721 aggtatctgggctgatatctttgctaaggctttggctaagcaaaacatcaaggacttgtw 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3968 aggtatctgggctgatatctttgctaaggctttggctaagcaaaacatcaaggacttgtt 4027
Query: 781 ggtcaagttcgaagctggtgctggtggtgctgc 813
|||||||||||||||||||||||||||||||||
Sbjct: 4028 ggtcaagttcgaagctggtgctggtggtgctgc 4060
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.716 1.34
Gapped
Lambda K H
1.41 0.716 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4174
Number of Sequences: 1807
Number of extensions: 4174
Number of successful extensions: 109
Number of sequences better than 1.0e-20: 1
length of query: 813
length of database: 10,358,551
effective HSP length: 16
effective length of query: 797
effective length of database: 10,329,639
effective search space: 8232722283
effective search space used: 8232722283
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.5 bits)
S1: 12 (24.9 bits)
S2: 49 (100.2 bits)